miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|190206205|gb|FG675020.1|FG675020 TTTTCTTTTTTTTTTTTGCTTCTGCTTTGTGGATAAAATCCGCTGCTTGGTCCAGGGTCTCTTGCAAGTCTGTGAGCTTG
GTGTTGTGCTCTGCAAGCTGGGTCAGTATGTCAGGAATCAGTGATCTGCTTTCATTATGTCTCTTCTGCCACTGTTCAAC
TTGTTTTAGCAAATCCTGAGCTGCTTCAGATTCTTCGCCTGCAAGTTGCATTTGAATGGTGAATGGTTTGCGGGCTCTGA
TGTCCTTCATCATCTCTTCTGCTACCTTGAGCTTCTGGATGATATCTTCAGGCCTCAGATCATGCTCAACCCCATAGTAT
TCCACCTTGCTGCCGATTTCCTGGACATTATCTATCATATTTTGAAGTGCCTGCACAAGAATAGTAGCACGATTGGTCAT
CTCCATGGTTTTCTTCTGAACCAGTAGGCCTTTCCTTGATTCTTGATTTGTCTTTTCATCTAGTGCATTGATATTTTTGA
GAAGATCAGTCATTTCGTTGGCAGCATGATCAATCTGGCTCTTCATCAGTGCAGAAGTATTATCCTTTTCGGATAGTTTT
TCCTTGAGGATGAAAGTGGTGGAATTGAGGTCATGCAAGTGTTTGTGAGCAGCAACCCCAGTGGAGATGCTGAGGAGAGT
TTCTTTGCTTTCATCGATGGACTGAGCTGCCAAGCCAATATCATCTGTCAAGTCCCAAATGCATTTGTCACAGCTAATAA
CAGGACAATCTGTCCCTGGAGGAGGCATTGGAGGCTCTGCTAGGCATTTCCCCTGTTTGACGGTCACAGGTCCTCCTCCA
CAGGTGCATGCTGCACATCTTAAGGTATTCTAGCATTCCATAAAAACCAGGAG




Most similar to sp|Q16363|LAMA4_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q16363|LAMA4_HUMAN Laminin subunit alpha-4 OS=Homo sapiens
            GN=LAMA4 PE=1 SV=4
          Length = 1823

 Score =  286 bits (733), Expect = 1e-76
 Identities = 135/262 (51%), Positives = 191/262 (72%)
 Frame = -1

Query: 817  CAACTCGGGPVTVKQGKCLAEPPMPPPGTDCPVISCDKCIWDLTDDIGLAAQSIDESKET 638
            CA C CGGGP     G+CL E   PP G DCP ISCDKC+WDLTD + LAA SI+E K  
Sbjct: 238  CAVCNCGGGPCDSVTGECLEEGFEPPTGMDCPTISCDKCVWDLTDALRLAALSIEEGKSG 297

Query: 637  LLSISTGVAAHKHLHDLNSTTFILKEKLSEKDNTSALMKSQIDHAANEMTDLLKNINALD 458
            +LS+S+G AAH+H++++N+T ++LK KLSE++N  AL K QI++A N M  LL ++  L 
Sbjct: 298  VLSVSSGAAAHRHVNEINATIYLLKTKLSERENQYALRKIQINNAENTMKSLLSDVEELV 357

Query: 457  EKTNQESRKGLLVQKKTMEMTNRATILVQALQNMIDNVQEIGSKVEYYGVEHDLRPEDII 278
            EK NQ SRKG LVQK++M+  N A+ LV+   +M D +QEI +K+ YYG EH+L P++I 
Sbjct: 358  EKENQASRKGQLVQKESMDTINHASQLVEQAHDMRDKIQEINNKMLYYGEEHELSPKEIS 417

Query: 277  QKLKVAEEMMKDIRARKPFTIQMQLAGEESEAAQDLLKQVEQWQKRHNESRSLIPDILTQ 98
            +KL +A++M+++IR+R+PF  Q +L  EE++ A +LL Q E WQ+ HNE+R+L P +L Q
Sbjct: 418  EKLVLAQKMLEEIRSRQPFFTQRELVDEEADEAYELLSQAESWQRLHNETRTLFPVVLEQ 477

Query: 97   LAEHNTKLTDLQETLDQAADFI 32
            L ++N KL+DLQE LDQA +++
Sbjct: 478  LDDYNAKLSDLQEALDQALNYV 499